Man page for ofmotionqcΒΆ

NAME

pymvpa2-ofmotionqc - BOLD fMRI motion QC plot for an OpenFMRI dataset  

SYNOPSIS

pymvpa2 ,ofmotionqc /[,--version/] [,-h/] ,--path PATH /[,-t ID/] [,--estimate-fname NAME/] [,--exclude-subjs ID /[,ID /...]] [,--outlier-minthresh OUTLIER_MINTHRESH/] [,--outlier-stdthresh OUTLIER_STDTHRESH/] [,--savefig SAVEFIG/]  

DESCRIPTION

Generate a QC plot for BOLD fMRI motion estimates from an OpenFMRI dataset  

OPTIONS

--version
show program's version and license information and exit
-h, --help, --help-np
show this help message and exit. --help-np forcefully disables the use of a pager for displaying the help.
--path PATH
path to the root directory of the OpenFMRI dataset
-t ID, --task ID
ID of the task with BOLD fMRI data for the QC plot. Default: 1
--estimate-fname NAME
name of the files with the motion estimates in each BOLD task run folder. Default: bold_moest.txt
--exclude-subjs ID [ID ...]
list of space-separated suject IDs to exclude from the QC analysis
--outlier-minthresh OUTLIER_MINTHRESH
minimum absolute threshold for outlier detection. Default: None
--outlier-stdthresh OUTLIER_STDTHRESH
minimum threshold in units of standard deviation for outlier detection. Default: None
--savefig SAVEFIG
file name to store the QC figure under. Default: None

is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. Written by Michael Hanke & Yaroslav Halchenko, and numerous other contributors.

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