This module reference extends the manual with a comprehensive overview of the currently available functionality, that is built into PyMVPA. However, instead of a full list including every single line of the PyMVPA code base, this reference limits itself to the relevant pieces of the application programming interface (API) that are of particular interest to users of this framework.
Each module in the package is documented by a general summary of its purpose and the list of classes and functions it provides.
base | |
base.attributes | |
base.collections | |
base.config | |
base.constraints | |
base.dochelpers | |
base.externals | |
base.hdf5 | |
base.info | |
base.learner | |
base.node | |
base.param | |
base.progress | |
base.report | |
base.state | |
base.types | Define names for all type symbols known in the standard interpreter. |
base.verbosity |
generators | |
generators.base | |
generators.partition | |
generators.permutation | |
generators.resampling | |
generators.splitters |
measures.base | |
measures.anova | |
measures.irelief | |
measures.noiseperturbation | |
measures.gnbsearchlight | |
measures.nnsearchlight | |
measures.rsa | |
measures.searchlight | |
measures.statsmodels_adaptor | |
measures.winner |
featsel.base | |
featsel.ifs | |
featsel.rfe | |
featsel.helpers |
algorithms.hyperalignment | |
algorithms.group_clusterthr |
testing | |
testing.clfs | |
testing.datasets | |
testing.tools | |
testing.sweepargs(**kwargs) | Decorator function to sweep over a given set of classifiers |
tests |
viz | |
misc.plot | |
misc.plot.base | |
misc.plot.erp | |
misc.plot.flat_surf | |
misc.plot.lightbox | |
misc.plot.topo |
misc.bv | |
misc.bv.base | |
misc.fsl | |
misc.fsl.base | |
misc.fsl.flobs | |
misc.fsl.melodic | |
misc.io | The io module provides the Python interfaces to stream handling. |
misc.io.base | |
misc.io.hamster | |
misc.io.meg | |
support.nibabel | This package provides read and write access to some common medical and neuroimaging file formats, including: ANALYZE_ (plain, SPM99, SPM2), GIFTI_, NIfTI1_, MINC_, MGH_ and ECAT_ as well as PAR/REC. |
support.nibabel.afni_niml_annot | |
support.nibabel.afni_niml_dset | |
support.nibabel.afni_niml_roi | |
support.nibabel.afni_niml | |
support.nibabel.afni_suma_1d | |
support.nibabel.afni_suma_spec | |
support.nibabel.surf_fs_asc | |
support.nibabel.surf_caret | |
support.nibabel.surf_gifti | |
support.nibabel.surf |